TSitologiya i Genetika 2021, vol. 55, no. 6, 32-39
Cytology and Genetics 2021, vol. 55, no. 6, 524–530, doi: https://www.doi.org/10.3103/S0095452721060050

Taxonomic analysis of the strain Bacillus sp. 20F, a phosphate mobilizer with antagonistic properties

Korzh Yu.V., Zelena L.B., Dragovoz I.V., Avdeyeva L.V.

  • Zabolotny Institute of Microbiology and Virology, the National Academy of Sciences of Ukraine, 154, Acad. Zabolotnoho Str., Kyiv, 03143, Ukraine

SUMMARY. The systematic position of the strain Bacillus sp. 20F was found to be an antagonist of phytopathogenic bacteria and micromycetes with pronounced phosphate-mobilizing properties. It was shown that the set of cultural-morphological and physiological-biochemical properties of the strain belongs to the group Bacillus subtilis. The fatty acids of the cell wall of the strain are mainly branched derivatives of iso- and anteiso-C15:0 and C17:0 fatty acids (approximately 82 %), which is characteristic of the species Bacillus amyloliquefaciens. According to the analysis of the nucleotide sequence of the 16S rRNA gene and the study of the profile of polymorphic nucleotides, the strain is classified as Bacillus velezensis.

Keywords: Bacillus sp. 20F, cultural and morphological features, physiological and biochemical properties, fatty acid composition, molecular genetic analysis, identification, systematic position

TSitologiya i Genetika
2021, vol. 55, no. 6, 32-39

Current Issue
Cytology and Genetics
2021, vol. 55, no. 6, 524–530,
doi: 10.3103/S0095452721060050

Full text and supplemented materials

References

1. Berkeley, R., Heyndrickx, M., Logan, N., et al., Applications and Systematics of Bacillus and Relatives, Oxford: Blackwell Science Ltd., 2002.

2. Beneduzi, A., Ambrosini, A., and Passaglia, L.M.P., Plant growth-promoting rhizobacteria (PGPR): Their potential as antagonists and biocontrol agents, Genet. Mol. Biol., 2012. https://doi.org/10.1590/S1415-47572012000600020

3. Borriss, R., Chen, X.H., Rueckert, C., et al., Relationship of Bacillus amiloliquefaciens clades associated with strains DSM7T and FZB42: a proposal for Bacillus amiloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amiloliquefaciens subsp. plantarum subsp. nov. based on their discriminating complete genome sequences, Int. J. Syst. Evol. Microbiol., 2011, vol. 61, pp. 1786–1801.

4. Chazarreta Cifre, L., Alemany, M., de Mendoza, D., et al., Exploring the biosynthesis of unsaturated fatty acids in Bacillus cereus ATCC 14579 and functional characterization of novel acyl-lipid desaturases, Appl. Environ. Microbiol., 2013. https://doi.org/10.1128/AEM.01761-13

5. de Carvalho, C.C.C.R. and Caramujo, M.J., The various roles of fatty acids, Molecules, 2018. https://doi.org/10.3390/molecules23102583

6. de Sarrau, B., Clavel, T., Zwickel, N., et al., Unsaturated fatty acids from food and in the growth medium improve growth of Bacillus cereus under cold and anaerobic conditions, Food Microbiol., 2013. https://doi.org/10.1016/j.fm.2013.04.008

7. de Vos, P., Garrity, G.M., Jones, D., et al., The Firmicutes, vol. 3 of Bergey’s Manual of Systematic Bacteriology, New York: Springer, 2009, 2nd ed.

8. Diomande, S.E., Nguyen-The, C., and Guinebretiere, M.H., Role of fatty acids in Bacillus environmental adaptation, J. Front. Microbiol., 2015. https://doi.org/10.3389/fmicb.2015.00813

9. Dunlap, C.A., Kim, S.J., Kwon, S.W., et al., Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus, Int. J. Syst. Evol. Microbiol., 2015. https://doi.org/10.1099/ijs.0.000226

10. Dunlap, C.A., Kim, S.J., Kwon, S.W., et al., Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and ‘Bacillus oryzicola’ are later heterotypic synonyms of Bacillus velezensis based on phylogenomics, Int. J. Syst. Evol. Microbiol., 2016. https://doi.org/10.1099/ijsem.0.000858

11. Ehrhardt, C.J., Chu, V., Brown, T., et al., Use of fatty acid methyl ester profiles for discrimination of Bacillus cereus T-strain spores grown on different media, Appl. Environ. Microbiol., 2010. https://doi.org/10.1128/AEM.02443-09

12. Fernandez-No, I.C., Bohme, K., Caamaco-Antelo, S., et al., Identification of single nucleotide polymorphisms (SNPs) in the 16S rRNA gene of foodborne Bacillus spp., Food Microbiol., 2015. https://doi.org/10.1016/j.fm.2014.08.010

13. Guinebretiere, M., Auger, S., Galleron, N., et al., Bacillus cytotoxicus sp. nov. is a new thermotolerant species of the Bacillus cereus group occasionally associated with food poisoning, Int. J. Syst. Evol. Microbiol., 2013. https://doi.org/10.1099/ijs.0.030627-0

14. Hakovirta, J.R., Prezioso, S., Hodge, D., et al., Identification and analysis of informative single nucleotide polymorphisms in 16S rRNA gene sequences of the Bacillus cereus group, J. Clin. Microbiol., 2016. https://doi.org/10.1128/JCM.01267-16

15. Kaneda, T., Iso- and anteiso-fatty acids in bacteria: biosynthesis, function and taxonomic significance, Microbiol. Rev., 1991, vol. 55, pp. 288–302.

16. Lane, D.G., Nucleic acids techniques in bacterial systematic, in Stackebrandt, E. and Goodfellow, M., Eds., Chichester, United Kingdom: John Wiley, 1991, pp. 115–175.

17. Netrusov, A.I., Egorova, M.A., and Zakharchuk, L.M., Practice on Microbiology, Moscow: Academia, 2005.

18. Ngalimat, M.S. and Sabri, S., Taxonomic note: Speciation within the operational group Bacillus amyloliquefaciens based on comparative phylogenies of housekeeping genes, Asia-Pac. J. Mol. Biol. Biotechnol., 2020, vol. 28, pp. 19–26.

19. Ongena, M. and Jacques, P., Bacillus lipopeptides: versatile weapons for plant disease Biocontrol, Trends Microbiol., 2008. https://doi.org/10.1016/j.tim.2007.12.009

20. Petrackova, D., Vecer, J., Svobodova, J., et al., Long-term adaptation of Bacillus subtilis 168 to extreme pH affects chemical and physical properties of the cellular membrane, J. Membr. Biol., 2010. https://doi.org/10.1007/s00232-010-9226-9

21. Reva, O.N., Sorokulova, I.B., and Smirnov, V.V., Simplified technique for dentification of the aerobic spore-forming bacteria by phenotype, Int. J. Syst. Evol. Microbiol., 2001. https://doi.org/10.1099/00207713-51-4-1361

22. Ruiz-Garcia, C., Bejar, V., Martinez-Checa, F., et al., Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Velez in Malaga, southern Spain, Int. J. Syst. Evol. Microbiol., 2005. https://doi.org/10.1099/ijs.0.63310-0

23. Safronova, L.A., Zelena, L.B., Klochko, V.V., et al., Does the applicability of Bacillus strains in probiotics rely upon their taxonomy, Can. J. Microbiol., 2012. https://doi.org/10.1139/w11-113

24. Shobharani, P. and Halami, P.M., Cellular fatty acid profile and H(+)-ATPase activity to assess acid tolerance of Bacillus sp. for potential probiotic functional attributes, Appl. Microbiol. Biotechnol., 2014. https://doi.org/10.1007/s00253-014-5981-3

25. Song, Y., Yang, R., Guo, Z., et al., Distinctness of spore and vegetative cellular fatty acid profiles of some aerobic endospore-forming Bacilli, J. Microbiol. Methods, 2000. https://doi.org/10.1016/S0167-7012(99)00123-2

26. Su, C., Lei, L., Duan, Y., et al., Culture-independent methods for studying environmental microorganisms: methods, application, and perspective, Appl. Microbiol. Biotechnol., 2012. https://doi.org/10.1007/s00253-011-3800-7

27. Suutari, M. and Laakso, S., Microbial fatty acids and thermal adaptation, Crit. Rev. Microbiol., 1994. https://doi.org/10.3109/10408419409113560

28. Tamura, K., Peterson, D., Peterson, N., et al., MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 2011. https://doi.org/10.1093/molbev/msr121